看了 kanekoayano 的演出。临时决定去看的，也不清楚为什么秀动和公众号上直接检索不到这个乐队的演出。还是加了一个群才知道。想着天天看代码真的遭不住，于是就买票来看了。 吸取了上次看角铜真实的教训，这次我早早的就来了，结果以为人不是很多，很轻松就买到了周边。看演出前我也查了一下，这个乐队是去年成立的，现在也就两张专辑，没啥名气也很正常。 周边有点贵，我也不理解，碟片要 220，感觉这个专辑也不怎么样，有两首歌还可以，其它的就一般了。说实话，单说周边质量有点敷衍，但毕竟也是随便选的来看的乐队，也很正常。 这次有点像 live house...

英语的一个 speech，选择的 Anime 作为话题。附上了 ppt 和稿子，都是自己写的，难免有错漏也没有那么严谨，但也放上来作为记录。 The topic I want to explore today is anime. Perhaps we often encounter elements of anime in our daily lives, and we frequently hear terms like "anime," "two-dimensional world," and...

# Title Virtual Cell Challenge: Toward a Turing test for the virtual cell # Introduction These ‘‘virtual cells’’ are expected to learn the relationship between cell state and function and are intended to predict the conse quences of perturbations—such as a gene knockdown or the application of...

# Title Systema: a framework for evaluating genetic perturbation response prediction beyond systematic variation # Abstract # 什么是系统变异 Systematic variation：the consistent transcriptional differences between perturbed and control cells arising from selection biases or confounders. # Metrics common...

# Title Deep-learning-based gene perturbation effect prediction does not yet outperform simple linear baselines # 数据集 Norman et al.11, in which 100 individual genes and 124 pairs of genes were upregulated in K562 cells with a CRISPR activation system we used two CRISPR interference datasets by...

123456789101112131415161718192021222324252627282930# 最优传输如何用最少的代价将一个质量分布转为另一个质量分布## MongeLet μ and ν be two measures in $\mathbb{R}^d$. The optimal transport problem by Monge is defined as$$\begin{equation}{\arg \min...

本周主要针对代码和数据进行了学习 主要先是把 GEARS 中用到的这些数据下载了下来并查看了数据的格式。 # 数据 # Gene2Go 查看了 Go 数据集是怎么使用的，以及怎么检索 GO 数据的实际含义： 搜索 GO 的信息：https://geneontology.org/ # 对于 Norman 数据集 1print(adata_temp) 12345AnnData object with n_obs × n_vars = 91205 × 5045 obs: 'condition', 'cell_type',...